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題名 TADs are 3D structural units of higher-order chromosome organization in Drosophila
作者 張家銘
Szabo, Quentin
Jost, Daniel
Chang, Jia-Ming
Cattoni, Diego I.
貢獻者 資科系
日期 2018-02
上傳時間 17-Apr-2018 15:42:19 (UTC+8)
摘要 Deciphering the rules of genome folding in the cell nucleus is essential to understand its functions. Recent chromosome conformation capture (Hi-C) studies have revealed that the genome is partitioned into topologically associating domains (TADs), which demarcate functional epigenetic domains defined by combinations of specific chromatin marks. However, whether TADs are true physical units in each cell nucleus or whether they reflect statistical frequencies of measured interactions within cell populations is unclear. Using a combination of Hi-C, three-dimensional (3D) fluorescent in situ hybridization, super-resolution microscopy, and polymer modeling, we provide an integrative view of chromatin folding in Drosophila. We observed that repressed TADs form a succession of discrete nanocompartments, interspersed by less condensed active regions. Single-cell analysis revealed a consistent TAD-based physical compartmentalization of the chromatin fiber, with some degree of heterogeneity in intra-TAD conformations and in cis and trans inter-TAD contact events. These results indicate that TADs are fundamental 3D genome units that engage in dynamic higher-order inter-TAD connections. This domain-based architecture is likely to play a major role in regulatory transactions during DNA-dependent processes.
關聯 Science Advances, Vol. 4, no. 2, eaar8082
資料類型 article
DOI http://dx.doi.org/10.1126/sciadv.aar8082
dc.contributor 資科系zh_Tw
dc.creator (作者) 張家銘zh_TW
dc.creator (作者) Szabo, Quentinen_US
dc.creator (作者) Jost, Danielen_US
dc.creator (作者) Chang, Jia-Mingen_US
dc.creator (作者) Cattoni, Diego I.en_US
dc.date (日期) 2018-02
dc.date.accessioned 17-Apr-2018 15:42:19 (UTC+8)-
dc.date.available 17-Apr-2018 15:42:19 (UTC+8)-
dc.date.issued (上傳時間) 17-Apr-2018 15:42:19 (UTC+8)-
dc.identifier.uri (URI) http://nccur.lib.nccu.edu.tw/handle/140.119/116882-
dc.description.abstract (摘要) Deciphering the rules of genome folding in the cell nucleus is essential to understand its functions. Recent chromosome conformation capture (Hi-C) studies have revealed that the genome is partitioned into topologically associating domains (TADs), which demarcate functional epigenetic domains defined by combinations of specific chromatin marks. However, whether TADs are true physical units in each cell nucleus or whether they reflect statistical frequencies of measured interactions within cell populations is unclear. Using a combination of Hi-C, three-dimensional (3D) fluorescent in situ hybridization, super-resolution microscopy, and polymer modeling, we provide an integrative view of chromatin folding in Drosophila. We observed that repressed TADs form a succession of discrete nanocompartments, interspersed by less condensed active regions. Single-cell analysis revealed a consistent TAD-based physical compartmentalization of the chromatin fiber, with some degree of heterogeneity in intra-TAD conformations and in cis and trans inter-TAD contact events. These results indicate that TADs are fundamental 3D genome units that engage in dynamic higher-order inter-TAD connections. This domain-based architecture is likely to play a major role in regulatory transactions during DNA-dependent processes.en_US
dc.format.extent 1896614 bytes-
dc.format.mimetype application/pdf-
dc.relation (關聯) Science Advances, Vol. 4, no. 2, eaar8082
dc.title (題名) TADs are 3D structural units of higher-order chromosome organization in Drosophilaen_US
dc.type (資料類型) article
dc.identifier.doi (DOI) 10.1126/sciadv.aar8082
dc.doi.uri (DOI) http://dx.doi.org/10.1126/sciadv.aar8082