學術產出-Periodical Articles
Article View/Open
Publication Export
-
題名 T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension 作者 Chang, Jia-Ming
張家銘
Notredame, Cedric
Taly, Jean-François
Montanyola, Alberto
Orobitg, Miquel
Xenarios, Ioannis
Moretti, Sebastien
Tommaso, Di;Paolo貢獻者 資科系 日期 2011-07 上傳時間 27-Apr-2016 15:29:56 (UTC+8) 摘要 This article introduces a new interface for T-Coffee, a consistency-based multiple sequence alignment program. This interface provides an easy and intuitive access to the most popular functionality of the package. These include the default T-Coffee mode for protein and nucleic acid sequences, the M-Coffee mode that allows combining the output of any other aligners, and template-based modes of T-Coffee that deliver high accuracy alignments while using structural or homology derived templates. These three available template modes are Expresso for the alignment of protein with a known 3D-Structure, R-Coffee to align RNA sequences with conserved secondary structures and PSI-Coffee to accurately align distantly related sequences using homology extension. The new server benefits from recent improvements of the T-Coffee algorithm and can align up to 150 sequences as long as 10,000 residues and is available from both http://www.tcoffee.org and its main mirror http://tcoffee.crg.cat. 關聯 Nucleic Acids Research, 39, W13-17 資料類型 article DOI http://dx.doi.org/10.1093/nar/gkr245 dc.contributor 資科系 - dc.creator (作者) Chang, Jia-Ming - dc.creator (作者) 張家銘 zh_TW dc.creator (作者) Notredame, Cedric en_US dc.creator (作者) Taly, Jean-François en_US dc.creator (作者) Montanyola, Alberto en_US dc.creator (作者) Orobitg, Miquel en_US dc.creator (作者) Xenarios, Ioannis en_US dc.creator (作者) Moretti, Sebastien en_US dc.creator (作者) Tommaso, Di;Paolo en_US dc.date (日期) 2011-07 - dc.date.accessioned 27-Apr-2016 15:29:56 (UTC+8) - dc.date.available 27-Apr-2016 15:29:56 (UTC+8) - dc.date.issued (上傳時間) 27-Apr-2016 15:29:56 (UTC+8) - dc.identifier.uri (URI) http://nccur.lib.nccu.edu.tw/handle/140.119/86638 - dc.description.abstract (摘要) This article introduces a new interface for T-Coffee, a consistency-based multiple sequence alignment program. This interface provides an easy and intuitive access to the most popular functionality of the package. These include the default T-Coffee mode for protein and nucleic acid sequences, the M-Coffee mode that allows combining the output of any other aligners, and template-based modes of T-Coffee that deliver high accuracy alignments while using structural or homology derived templates. These three available template modes are Expresso for the alignment of protein with a known 3D-Structure, R-Coffee to align RNA sequences with conserved secondary structures and PSI-Coffee to accurately align distantly related sequences using homology extension. The new server benefits from recent improvements of the T-Coffee algorithm and can align up to 150 sequences as long as 10,000 residues and is available from both http://www.tcoffee.org and its main mirror http://tcoffee.crg.cat. - dc.format.extent 2133245 bytes - dc.format.mimetype application/pdf - dc.relation (關聯) Nucleic Acids Research, 39, W13-17 - dc.title (題名) T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension - dc.type (資料類型) article - dc.identifier.doi (DOI) 10.1093/nar/gkr245 - dc.doi.uri (DOI) http://dx.doi.org/10.1093/nar/gkr245 -
